Supplementary file list
| File list | Description |
|---|---|
| Supplementary File 1 | List of differentially expressed genes and isoforms (DEGs and DEIs) |
| Supplementary File 2 | MicroRNA expression plot for tumor and normal tissues |
| Supplementary File 3 | List of CNV genes in at least 3 out of 6 patients |
| Supplementary File 4 | List of DMR genes |
| Supplementary File 5 | Gene lists with brief summaries for somatic mutations, fusion transcripts, and network modules |